Publications

  • Neurohub Technical Papers

    2012
    Das S, Zijdenbos AP, Vins D, Harlap J, Evans AC (2012) LORIS: A web-based data management system for multi-center studies. Front Neuroinf 5:37 read the paper
    2014
    Sherif T, Rioux P, Rousseau M-E, Kassis N, Beck N, Glatard T, Adalat R, Das S, Evans AC (2014) CBRAIN: A web-based, distributed computing platform for collaborative neuroimaging research. FFront Neurosci 8: 54 read the paper
    Glatard T, Rousseau M-E, Rioux P, Adalat R, Evans AC (2014) Controlling the deployment of virtual machines on clusters and clouds for scientific computing in CBRAIN. Cluster, Cloud and Grid Computing (CCGrid) 4: 384-93 read the paper
    Caspers S, Moebus S, Lux S, Pundt N, Schütz H, Mühleisen TW, Gras V, Eickhoff SB, Romanzetti S, Stöcker T, Kirlangic ME, Minnerop M, Pieperhoff P, Mödder U, Das S, Evans AC, Jöckel K-H, Erbel R, Cichon S, Nöthen MM, Sturma D, Bauer A, Shah NJ, Zilles K, Amunts K (2014) 1000BRAINS: studying variability of human brain ageing in a population-based German cohort. Front Aging Neurosci 6: 149 read the paper
    2015
    Glatard T and Evans AC (2015) Classifications of computing sites to handle numerical variability. Cluster, Cloud and Grid Computing (CCGrid) 5: 863-87 read the paper
    Rogers C, Kostopoulos P, McFarlane D, Mohaddes Z, Brien D, St-Georges N, Portales-Casamar E, Das S, Evans AC (2015) LORIS: Enhanced tools for data management in neurodevelopmental studies. Int J Dev Neurosci 47(A): 125 read the paper
    Sherif T, Kassis N, Rousseau M-E, Adalat R, Evans AC (2015) BrainBrowser: distributed, web-based neurological data visualization. Front Neuroinf 8:89 read the paper
    Glatard T, Lewis LB, Ferreira da Silva R, Adalat R, Beck N, Lepage C, Rioux P, Rousseau ME, Sherif T, Deelman E, Khalili-Mahani N, Evans AC (2015) Reproducibility of neuroimaging analyses across operating systems. Front Neuroinform 9: 12 read the paper
    2016
    Glatard T, Das S, Adalat R, Beck N, Bernard R, Khalili-Mahani N, Rioux P, M-É Rousseau, Evans AC (2016) Nipype interfaces in CBRAIN. GigaScience 12-12 read the paper
    Niso G, Rogers C, Moreau JT, Chen LY, Madjar C, Das S, Bock E, Tadel F, Evans A, Jolicoeur P, Baillet S (2016) OMEGA: The Open MEG Archive. Neuroimage 124: 1182-7 read the paper
    Das S, Glatard T, MacIntyre LC, Madjar C, Rogers C, Rousseau ME, Rioux P, MacFarlane D, Mohaddes Z, Gnanasekaran R, Makowski C, Kostopoulos P, Adalat R, Niso G, Moreau JT, Evans AC (2016) The MNI data-sharing and processing ecosystem. Neuroimage 124: 1188-95 read the paper
    2017
    Das S, Glatard T, Rogers C, Saigle J, Paiva S, MacIntyre L, Safi-Harab M, Rousseau M-E, Stirling J, MacFarlane D, Kostopoulos P, Rioux P, Madjar C, Lecours-Boucher X, Vanamala S, Adalat R, Mohaddes Z, Khalili-Mahani N, Fonov VS, Milot S, Leppert IR, Degroot C, Durcan TM, Campbell T, Moreau J, Dagher, A, Collins DL, Karamchandani J, Bar-Or A, Fon EA, Hoge R, Baillet S, Rouleau G, Evans AC (2017) Cyberinfrastructure for open science at the Montreal Neurological Institute. Front Neuroinf 10: 53 read the paper
    Glatard T, Rousseau ME,Camarasu-Pop S, Adalat R, Beck N, Das S, Da Silva RF, Khalili-Mahani N, Korkhov V, Quirion PO, Rioux P, Olabarriaga SD, Bellec P, Evans AC (2017) Software architecture to integrate workflow engines in science gateways. Future Generation Computer Systems 75: 239-55 read the paper
    2018
    Glatard T, Kiar G, Aumentado-Armstrong T, Beck N, Bellec P, Bernard R, Bonnet A, Camarasu-Pop S, Cervenansky F, Das S, Ferreira da Silva R, Flandin G, Girard P, Gorgolewski KJ, Guttmann CG, Hayot-Sasson V, Quirion P-O, Rioux P, Rousseau M-É, Evans AC (2018) Boutiques: a flexible framework for automated application integration in computing platforms. GigaScience 7(5): 1-11 read the paper
    Dyke SOM, Linden M, Lappalainen I, De Argila JR, Carey K, Lloyd D, Spalding JD, Cabili MN, Kerry G, Foreman J, Cutts T, Shabani M, Rodriguez LL, Haeussler M, Walsh B, Jiang X, Wang S, Perrett D, Boughtwood T, Matern A, Brookes AJ, Cupak M, Fiume M, Pandya R, Tulchinsky I, Scollen S, Törnroos J, Das S, Evans AC, Malin BA, Beck S, Brenner SE, Nyrönen T, Blomberg N, Firth HV, Hurles M, Philippakis AA, Rätsch G, Brudno M, Boycott KM, Rehm HL, Baudis M, Sherry ST, Kato K, Knoppers BM, Baker D, Flicek P (2018) Registered access: authorizing data access. Eur J Hum Genet 26(12): 1721-31 read the paper
    Mohaddes Z, Das S, Abou-Haidar R, Safi-Harab M, Blader D, Callegaro J, Henri-Bellmare C, Tunteng JF, Evans L, Campbell T, Lo D, Morin P-E, Whitehead V, Chertkow H, Evans AC (2018) National neuroinformatics framework for Canadian Consortium on Neurodegeneration in Aging (CCNA). Front Neuroinf 12: 85 read the paper
    Das S, Lecours-Boucher X, Rogers C, Chouinard-Decorte F, Klein KO, Makowski C, Beck N, Rioux P, Brown ST, Mohaddes Z, Zweber C, Foing V, Forest M, O’Donnell K, Clark J, Greenwood CMT, Meaney MJ, Evans AC (2018) Integration of “omics” data and phenotypic data within a unified extensible multimodal framework. Front Neuroinf 12: 91 read the paper
    2019
    Kiar G, Brown ST, Glatard T, Evans AC (2019) A serverless tool for platform agnostic computational experiment management. Front Neuroinform 13: 12 read the paper
    Chertkow H, Borrie M, Whitehead V, Black SE, Feldman HH, Gauthier S, Hogan DB, Masellis M, McGilton K, Rockwood K, Tierney MC, Andrew M, Hsiung GR, Camicioli R, Smith EE, Fogarty J, Lindsay J, Best S, Evans AC, Das S, Mohaddes Z, Pilon R, Poirier J, Phillips NA, MacNamara E, Dixon RA, Duchesne S, MacKenzie I, Rylett RJ (2019) The Comprehensive Assessment of Neurodegeneration and Dementia: Canadian Cohort Study. Can J Neurol Sci 46(5): 499-511 read the paper
    2020
    Bosch-Bayard JF, Aubert-Vazquez E, Brown ST, Rogers C, Kiar G, Glatard T, Scaria L, Galan L, Bringas ML, Virues-Alba T, Taheri A, Das S, Madjar C, Mohaddes Z, MacIntyre LC, Evans AC, Valdes-Sosa PA (2020) A quantitative EEG toolbox for the MNI Neuroinformatics ecosystem: normative SPM of EEG source spectra. Front Neuroinf 14: 33 read the paper
    Kiar G, Castro PdeO, Rioux P, Petit E, Brown ST, Evans AC, Glatard T (2020) Comparing perturbation models for evaluating stability of post-processing pipelines in neuroimaging. Int J High Performance Comput Appl 34(5): 491-501 doi read the paper
    Das S, Abou-Haidar R, Sun SD, Rabalais H, Rosli Z, Chatpar K, Boivin M-N, Tabatabaei M, Rogers C, Legault M, Lo D, Degroot C, Dagher A, Dyke S, Durcan T, Seyller A, Doyon J, Poupon V, Fon E, Genge A, Rouleau G, Karamchandani J, Evans AC (2020) The C-BIG Repository: An institution-level Open Science platform. Neuroinformatics in press
    Salari A, Kiar G, Lewis L, Evans AC, Glatard T (2020) File-based localization of numerical perturbations in data analysis pipelines. GigaScience submitted read the paper
    Tremblay-Mercier J, Madjar C, Das S, Dyke SOM, Étienne P, Lafaille-Magnan M-E, Bellec P, Collins L, Rajah NM, Bohbot V, Leoutsakos J, Iturria-Medina Y, Kat J, Hoge R, Gauthier S, Chakravarty M, Rosa-Neto P, Villeneuve S, Evans AC, Poirier J, Breitner JCS, PREVENT-AD Research Group (2020) Creation of an Open Science dataset from PREVENT-AD, a longitudinal cohort study of pre-symptomatic Alzheimer’s disease. bioRxiv 976670 submitted read the paper

  • Research Outcomes

    Pierre Rioux, Gregory Kiar, Alexandre Hutton, Alan C. Evans, and Shawn T. Brown. 2020 Deploying large fixed file datasets with SquashFS and Singularity. PEARC ’20: Practice and Experience in Advanced Research Computing doi
    Acosta H, Kantojärvi K, Tuulari JJ, et al Sex-specific association between infant caudate volumes and a polygenic risk score for major depressive disorder. J Neurosci Res. 2020;98:2529–2540. doi
    Loraine Georgy, John D. Lewis, Gleb Bezgin, Matteo Diano, Alessia Celeghin, Alan C. Evans, Marco Tamietto, Alain Ptito Changes in peri-calcarine cortical thickness in blindsigh. Neuropsychologia, Volume 143, 2020, 107463, ISSN 0028-3932 doi
    Gregory Kiar, Pablo de Oliveira Castro, Pierre Rioux, Eric Petit, Shawn T Brown, Alan C Evans, Tristan Glatard Comparing perturbation models for evaluating stability of neuroimaging pipelines. The International Journal of High Performance Computing Applications doi
    Shahrzad Kharabian Masouleh, Simon B Eickhoff, Yashar Zeighami, Lindsay B Lewis, Robert Dahnke, Christian Gaser, Francois Chouinard-Decorte, Claude Lepage, Lianne H Scholtens, Felix Hoffstaedter, David C Glahn, John Blangero, Alan C Evans, Sarah Genon, Sofie L Valk Influence of Processing Pipeline on Cortical Thickness Measurement. Cerebral Cortex, Volume 30, Issue 9, September 2020, Pages 5014–5027 doi
    H. Acosta, J.J. Tuulari, K. Kantojärvi, J.D. Lewis, N. Hashempour, N.M. Scheinin, S.J. Lehtola, V.S. Fonov, D.L. Collins, A. Evans, R. Parkkola, T. Lähdesmäki, J. Saunavaara, H. Merisaari, L. Karlsson, T. Paunio, H. Karlsson A variation in the infant oxytocin receptor gene modulates infant hippocampal volumes in association with sex and prenatal maternal anxiety. Psychiatry Research: Neuroimaging, 2020, 111207, ISSN 0925-4927 doi
    H Acosta, K Kantojärvi, N Hashempour, J Pelto, N M Scheinin, S J Lehtola, J D Lewis, V S Fonov, D L Collins, A Evans, R Parkkola, T Lähdesmäki, J Saunavaara, L Karlsson, H Merisaari, T Paunio, H Karlsson, J J Tuulari Partial Support for an Interaction Between a Polygenic Risk Score for Major Depressive Disorder and Prenatal Maternal Depressive Symptoms on Infant Right Amygdalar Volumes. Cerebral Cortex, Volume 30, Issue 12, December 2020, Pages 6121–6134 doi
    Satu J. Lehtola, Jetro J. Tuulari, Noora M. Scheinin, Linnea Karlsson, Riitta Parkkola, Harri Merisaari, John D. Lewis, Vladimir S. Fonov, D. Louis Collins, Alan Evans, Jani Saunavaara, Niloofar Hashempour, Tuire Lähdesmäki, Henriette Acosta, Hasse Karlsson Newborn amygdalar volumes are associated with maternal prenatal psychological distress in a sex-dependent way. NeuroImage: Clinical, Volume 28, 2020, 102380, ISSN 2213-1582 doi
    A Salari, G Kiar, L Lewis, AC Evans, T. Glatard File-based localization of numerical perturbations in data analysis pipelines. arxiv.org link
    Bosch-Bayard J, Aubert-Vazquez E, Brown ST, Rogers C, Kiar G, Glatard T, Scaria L, Galan-Garcia L, Bringas-Vega ML, Virues-Alba T, Taheri A, Das S, Madjar C, Mohaddes Z, MacIntyre L, CHBMP, Evans AC and Valdes-Sosa PA (2020) A Quantitative EEG Toolbox for the MNI Neuroinformatics Ecosystem: Normative SPM of EEG Source Spectra. Front. Neuroinform. 14:33 doi
    Claude Lepage, Konrad Wagstyl, Benjamin Jung, Jakob Seidlitz, Caleb Sponheim, Leslie Ungerleider, Xindi Wang, Alan C. Evans, Adam Messinger CIVET-Macaque: an automated pipeline for MRI-based cortical surface generation and cortical thickness in macaques. bioRxiv 2020.08.04.237149 doi
    Vandewouw, MM, Young, JM, Mossad, SI, et al. Mapping the neuroanatomical impact of very preterm birth across childhood. Hum Brain Mapp. 2020; 41: 892– 905 doi
    Pierre Besson, Todd Parrish, Aggelos K. Katsaggelos, S. Kathleen Bandt Geometric deep learning on brain shape predicts sex and age. bioRxiv 2020.06.29.177543 doi
    Pedro A. Valdes-Sosa, Lidice Galan, Jorge Bosch-Bayard, Maria L. Bringas Vega, Eduardo Aubert Vazquez, Samir Das, Trinidad Virues Alba, Cecile Madjar, Zia Mohades, Leigh C. MacIntyre, Christine Rogers, Shawn Brown, Lourdes Valdes Urrutia, Iris Rodriguez Gil, Alan C. Evans, Mitchell J. Valdes Sosa The Cuban Human Brain Mapping Project population based normative EEG, MRI, and Cognition dataset. bioRxiv 2020.07.08.194290 doi
    Budhachandra Khundrakpam, Uku Vainik, Jinnan Gong, Noor Al-Sharif, Neha Bhutani, Gregory Kiar, Yashar Zeighami, Matthias Kirschner, Cheng Luo, Alain Dagher, Alan Evans Neural correlates of polygenic risk score for autism spectrum disorders in general population. Brain Communications, Volume 2, Issue 2, 2020, fcaa092 doi
    N. Giroud, M. K. Pichora-Fuller, P. Mick, W. Wittich, F. Al-Yawer, S. Rehan, J.B. Orange, N. A. Phillips Hearing loss is associated with gray matter differences in older adults at risk for and with Alzheimer’s disease. medRxiv 2020.10.07.20208017 doi
    Christoph Fraenz, Dorothea Metzen, Christian J. Merz, Helene Selpien, Patrick Friedrich, Sebastian Ocklenburg, Nikolai Axmacher, Erhan Genç Fear learning sculpts functional brain connectivity at rest beyond the traditional fear network in humans. bioRxiv 2020.05.26.115840 doi
    McLachlan K, Zhou D, Little G, Rasmussen C, Pei J, Andrew G, Reynolds JN and Beaulieu C (2020) Current Socioeconomic Status Correlates With Brain Volumes in Healthy Children and Adolescents but Not in Children With Prenatal Alcohol Exposure. Front. Hum. Neurosci. 14:223 doi
    Ellen van der Plas, T. Leigh Spencer Noakes, Darci T. Butcher, Rosanna Weksberg, Laura Galin-Corini, Elizabeth A. Wanstall, Patrick Te, Laura Hopf, Sharon Guger, Brenda J. Spiegler, Johann Hitzler, Russell J. Schachar, Shinya Ito, Brian J. Nieman Quantitative MRI outcomes in child and adolescent leukemia survivors: Evidence for global alterations in gray and white matter. NeuroImage: Clinical, Volume 28, 2020, 102428, ISSN 2213-1582 doi
    Nikhil Bhagwat, Amadou Barry, Erin W. Dickie, Shawn T. Brown, Gabriel A. Devenyi, Koji Hatano, Elizabeth DuPre, Alain Dagher, M. Mallar Chakravarty, Celia M. T. Greenwood, Bratislav Misic, David N. Kennedy, Jean-Baptiste Poline Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses. bioRxiv 2020.05.22.100180 doi
    Yashar Zeighami, Alan C. Evans Association versus Prediction: the impact of cortical surface smoothing and parcellation on brain age. bioRxiv 2020.11.29.403105 doi
    Christina Tremblay, Nooshin Abbasi, Yashar Zeighami, Yvonne Yau, Mahsa Dadar, Shady Rahayel, Alain Daghe Sex effects on brain structure in de novo Parkinson’s disease: a multimodal neuroimaging study. Brain, Volume 143, Issue 10, October 2020, Pages 3052–3066 doi
    Amadou Barry, Nikhil Bhagwat, Bratislav Misic, Jean-Baptiste Poline & Celia M. T. Greenwood (2020) Asymmetric influence measure for high dimensional regression. Communications in Statistics - Theory and Methods doi
    Rauh, S., Torgerson, T., Johnson, A.L. et al. Reproducible and transparent research practices in published neurology research. Res Integr Peer Rev 5, 5 (2020) doi
    Erlan Sanchez, Caroline Arbour, Héjar El-Khatib, Karine Marcotte, Hélène Blais, Andrée-Ann Baril, Christophe Bedetti, Maxime Descoteaux, Jean-Marc Lina, Danielle Gilbert, Julie Carrier, Nadia Gosselin Sleep spindles are resilient to extensive white matter deterioration. Brain Communications, Volume 2, Issue 2, 2020, fcaa071 doi
    Jennifer Tremblay-Mercier, Cécile Madjar, Samir Das, Stephanie O.M. Dyke, Pierre Étienne, Marie-Elyse Lafaille-Magnan, Pierre Bellec, D. Louis Collins, M. Natasha Rajah, Veronique D. Bohbot, Jeannie-Marie Leoutsakos, Yasser Iturria-Medina, Justin Kat, Richard D. Hoge, Serge Gauthier, M. Mallar Chakravarty, Jean-Baptiste Poline, Pedro Rosa-Neto, Sylvia Villeneuve, Alan C. Evans, Judes Poirier, John C. S. Breitner Creation of an Open Science Dataset from PREVENT-AD, a Longitudinal Cohort Study of Pre-symptomatic Alzheimer’s Disease. the PREVENT-AD Research Group bioRxiv 2020.03.04.976670 doi
    Le Blanc, G., Jetté Pomerleau, V., McCarthy, J., Borroni, B., van Swieten, J., Galimberti, D., Sanchez‐Valle, R., LaForce, R., Jr, Moreno, F., Synofzik, M., Graff, C., Masellis, M., Tartaglia, M.C., Rowe, J.B., Vandenberghe, R., Finger, E., Tagliavini, F., de Mendonça, A., Santana, I., Butler, C., Gerhard, A., Danek, A., Levin, J., Otto, M., Frisoni, G., Sorbi, S., Rohrer, J.D., Ducharme, S. and (2020) Faster Cortical Thinning and Surface Area Loss in Presymptomatic and Symptomatic C9orf72 Repeat Expansion Adult Carriers. Ann Neurol, 88: 113-122 doi
    Navarri, X, Afzali, MH, Lavoie, J, et al. How do substance use disorders compare to other psychiatric conditions on structural brain abnormalities? A cross‐disorder meta‐analytic comparison using the ENIGMA consortium findings. Hum Brain Mapp. 2020; 1– 15 doi
    Bells, S, Isabella, SL, Brien, DC, et al. Mapping neural dynamics underlying saccade preparation and execution and their relation to reaction time and direction errors. Hum Brain Mapp. 2020; 41: 1934– 1949 doi